In reply to AlexW:
All my prusiks are the same length at the moment, but I have found that when attaching the klemheist (when changing to prusik-up mode) - it's too short and I have to find a way to unweight the abseil-device in order to clip the klemheist to my harness.
What I do to unweight the rope is to tie a slip-knot in the loose rope to use as a foot-loop, stand up on this and then clip the klemheist to my harness. With a longer prusik for the klemheist, I think you could clip it straight to your harness, abseil lower until the klemheist has your weight.
An alternative to the rope loop is to extend the klemheist with a sling - which I found too much of a faff.
So in summary - I think you'd probably want 150cm lengths for the short prusik (that's the standard length I believe), and 180cm-200cm lengths for the long prusik if going this route. Otherwise you can use the methods above if you want your prusiks all the same-length.