In reply to Cobra_Head:
A lot of the confusion here is that not all rope manufacturers have tested their ropes with all the available markers, and, of course, no-one can say that an untested combination is definitely safe.
Beal make a rope marker. It's a pain to apply and there's not a vast amount in the bottle, but I imagine you could make little circumferential loops around 35m of rope spaced 50cm apart. It definitely stiffens the rope a little, so I would not want to have long continuous stripes.
Quite a few manufacturers have tested their ropes with Beal's marker; the biggest name who say it's fine are probably Edelweiss. Mammut are the only one I know of who explicitly say that it cannot be used because they found a weakening effect.
Edelrid say they've never tested it, but they have tested a specific marker pen, the Edding 3000, and that this is fine for their ropes. I've used this pen on my Edelrid ropes and it's much nicer than the Beal marker - no stiffening effect and a lot neater. Edelrid carried out the tests in 2015 but say that their ropes haven't changed, and Edding confirmed to me in 2019 that the formula for the marker also hasn't changed. If I was going to do this again I would get a fresh confirmation from each company that neither of them have altered the chemistry recently.